Duterte also said that he negotiated for the release of Flor with the help of the Sulu Gov. Abdusakur Tan II.
The Transport Ministry issues notice in response to the latest kidnapping of the seven Indonesian sailors in Sulu.
The militants killed John Ridsdel in April as the ransom deadline lapsed and later they executed Flor's partner Robert Hall.
The injured passengers were travelling in one of the lorries.
The TB Charles Boat departed Samarinda on June 4 with 13 crewmen and was expected to return by June 27.
The scheme allows the commuters, who end their journey before 7.45 am on weekdays to ride for free at 18 designated MRT stations.
"We want to show that Indonesia is a big country and we have to show this physically," Widodo says.
The new Hwasong-10 missile has a range of more than 3,000 km, meaning all of Japan and the US territory of Guam are within reach.
The 27-year-old editor and his wife, Ai Takagi were charged with eight counts under Sedition Act.
16 government soldiers have been wounded during a clash in Patikul town, Sulu.
Japanese Defense Minister Gen Nakatani says the missile launch is a "grave provocative action".
Around 200,000 people have been forced to evacuate their houses in provinces including Hubei, Sichuan, Guizhou, Jiangxi, Yunnan, Zhejiang and Anhui.
Heavy showers have damaged thousands of houses, forcing the residents to leave.
The 10-hour long transplant surgery was done this year at the National University Hospital in March.
Indonesian President Joko Widodo says in a tweet the government would offer all assistance to the victims.